![]() This is taken from the tutorial so you will need to adapt the commands to exactly what you need, but I just wanted to provide an example of the usage. Then demultiplex qiime demux emp-single \ I've tried to play around with making sure the. I think this has something to do with the way my paths are set up. output-path emp-single-end-sequences.qza I get the error 'ImportError: No module named osgeo' when it tries to call the gdalmerge.py command. Split_libraries_fastq.py FASTQ_files/SRR5908980.fastq -barcode_type 'not-barcoded'įirst you would load your files into a. I would strongly recommend taking a look a the QIIME2 tutorial to get a sense of what the new commands look like but as an examples: Traceback (most recent call last): File 'tsp. ![]() IMHO the new model is much easier once you get past the initial changes. No Module Named Numpy is one of the persistent errors if you have multiple pythons installed or a virtual environment set up. The QIIME1 model of calling a script with a bunch of arguments is gone - hence why you are receiving an error, you are calling a QIIME1 script but QIIME1 no longer exists. QIIME2 represents a very different way of approaching analyses and interacting with data.
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